Ontology

ZFA

Zebrafish Anatomy Ontology

Anatomy and development of the zebrafish, including the larval and adult nervous system.

anatomyzebrafishOBO Foundry
A85

FAIR 48/48

Version 2026-07-16

Evaluated 27 Oct 2026

How scores work

Source & access

Homepagezfin.org Repositorygithub.com DownloadCanonical file / PURL Browse in OLSEMBL-EBI Ontology Lookup ServiceBrowse in BioPortalNCBO BioPortalBrowse in OBO FoundryOBO Foundry registry

Portals & registries

SourceIDVersionClassesPropertiesIndividualsLoaded
OLS (EMBL-EBI)zfa2026-07-163,29344027 Oct 2026
OBO Dashboardzfa2026-07-163,277——18 Jul 2026

Ontology IRI http://purl.obolibrary.org/obo/zfa.owl
Version IRI http://purl.obolibrary.org/obo/zfa/releases/2026-07-16/zfa.owl

Languages en

Imports from (4)
IAO OMO RO ZFS

Reused by (5)
ZP AEO EFO PRIDE ZFS

Logical consistency
consistent · 0 unsatisfiable
OWL 2 DL
yes
ROBOT report
0 errors · 471 warnings · 1 info
OBO principles
FP01FP02FP03FP04FP05FP06FP07FP08FP09FP11FP12FP16FP20
Axioms
31,943 · 2.17% entities reused

OOPS!: 0 critical · 1 important · 3 minor pitfall types

Also registered as
aberowl: ZFA bioportal: ZFA fairsharing: FAIRsharing.s3r6sk obofoundry: zfa ols: zfa ontobee: ZFA wikidata.entity: Q81661530

Automated evaluation

F Findable FAIR12/12
  • Persistent identifier (F1)purl.obolibrary.org+4
  • Indexed in services (F4)5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing+5
  • Citable reference (F2)doi:10.1186/2041-1480-5-12+3
A Accessible FAIR12/12
  • Homepage reachableHTTP 200+3
  • Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
  • Metadata persists in a registry (A2)OBO Foundry, Bioregistry+3
I Interoperable FAIR12/12
  • Formal machine-readable format (I1)OWL, OBO+5
  • Semantic-web IRIs (I2)OWL, OBO+3
  • References other vocabularies (I3)imports 4: iao, omo, ro, zfs+4
R Reusable FAIR12/12
  • Clear license (R1.1)CC BY 3.0+5
  • Release provenance (R1.2)2026-07-16 (version IRI in the artefact)+4
  • Community standards (R1.3)OBO principles: 12/13 checks pass+3
Q Ontology consistency & quality16/20
  • Logical consistencyconsistent, 0 unsatisfiable classes (OBO Dashboard)+10
  • OWL 2 DL profilein OWL 2 DL+2
  • Upper-ontology alignmentno BFO/COB/DOLCE import found0
  • Standard relations (RO)imports RO+1
  • ROBOT report: no errors0 errors+2
  • ROBOT report: warning density471 warnings / 3277 classes = 0.140
  • Pitfall scan: no critical pitfalls0 critical, 1 important, 3 minor pitfall types (OOPS! (local Docker))+1
M Maintenance15/16
  • Recency2026-09-23 → 1.1 months (≤ 3 months)+10
  • Release cadence (12 months)4 releases (GitHub releases)+5
U Community adoption6/16
  • Documented adopting projects1 project+2
  • Reused by other ontologies5: zp, aeo, efo, pride, zfs+2
  • Community signalmax(stars 8 → 1, citations 67 → 2)+2
P Penalties (inactivity & inconsistency)0
  • Time since last activity0.1 years → 4 × max(0, 0.1 − 1)0
  • Inactive statusnot archived, legacy or inactive0
  • Consistencyconsistent, no unsatisfiable classes0

FAIR subtotal 48/48 · earned 85/100 = 85/100 → grade A

Community adoption 1

  • ZFIN

    Expression and phenotype annotation

    Curated by SchemaScope

Know a project that uses ZFA? Suggest it.

History & changes 2 runs

26 Oct 2026: 8527 Oct 2026: 85Score over time
Metrics across runs
27 Oct 2026
rubric v3.5		26 Oct 2026
rubric v3.4
Score8585
Findable1212
Accessible1212
Interoperable1212
Reusable1212
Quality1616
Maintenance1515
Adoption66
Penalty00
Logically consistentyesyes
Unsatisfiable classes00
In OWL 2 DLyesyes
ROBOT errors00
ROBOT warnings471471
Critical pitfalls0—
Imported vocabularies44
Reused by55

Newest run first. Highlighted cells changed since the run before; hover to see the earlier value. A rubric change alone can move points.

No changes detected between runs.

RunScoreFAIRVersion evaluatedTermsSnapshot
27 Oct 2026, 21:58 UTC85 A482026-07-163,293JSON
26 Oct 2026, 03:31 UTC85 A482026-07-163,293JSON

Provenance

Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.

FactSourceRetrieved
Homepage link check (HTTP 200)zfin.org27 Oct 2026, 21:58 UTC
Repository link check (HTTP 200)github.com27 Oct 2026, 21:58 UTC
Download link check (HTTP 200)purl.obolibrary.org27 Oct 2026, 21:58 UTC
Artefact header (version IRI)raw.githubusercontent.com27 Oct 2026, 21:58 UTC
Git refs (commit 06ad6e8, latest tag v2026-07-16)github.com27 Oct 2026, 21:58 UTC
GitHub repository statisticsapi.github.com27 Oct 2026, 21:58 UTC
OLS classes, imports, version & releaseebi.ac.uk27 Oct 2026, 21:58 UTC
OBO Foundry status, license & usagesobofoundry.org27 Oct 2026, 21:58 UTC
Bioregistry mappings, dependencies & reusebioregistry.io27 Oct 2026, 21:58 UTC
OBO Dashboard (checked 18 Jul 2026)dashboard.obofoundry.org27 Oct 2026, 21:58 UTC
OOPS! pitfall scanoops.linkeddata.es27 Oct 2026, 21:56 UTC
Crossref citations (doi:10.1186/2041-1480-5-12)api.crossref.org27 Oct 2026, 21:58 UTC

Run 2026-10-27T21-58-30Z · evaluator v2.0.0 · rubric v3.5 · entry.json · run snapshot

How to cite