{
  "id": "neurobagel",
  "acronym": "Neurobagel",
  "name": "Neurobagel data model and vocabulary",
  "category": "neuro",
  "kind": "vocabulary",
  "description": "An RDF vocabulary (nb:) and a JSON Schema for data dictionaries that harmonise participant-level metadata (age, sex, diagnosis, assessments, imaging modality, processing pipelines) by annotating BIDS participants.tsv columns with SNOMED CT, NCIt and NIDM terms. The resulting graphs power Neurobagel's federated search across datasets.",
  "formats": [
    "JSON Schema",
    "JSON-LD",
    "RDF"
  ],
  "maintainer": "Neurobagel project (Origami Lab, McGill University)",
  "license": "MIT",
  "homepage": "https://neurobagel.org/",
  "repository": "https://github.com/neurobagel/documentation",
  "publications": [],
  "usedBy": [],
  "modules": [
    {
      "name": "Data dictionaries",
      "url": "https://neurobagel.org/data_models/dictionaries/",
      "note": "JSON Schema extending BIDS participants.json"
    },
    {
      "name": "Term naming standards",
      "url": "https://neurobagel.org/data_models/term_naming_standards/",
      "note": "nb: namespace and the external vocabularies it reuses"
    }
  ],
  "tools": [
    {
      "name": "bagel-cli",
      "url": "https://github.com/neurobagel/bagel-cli",
      "note": "Turns annotated BIDS datasets into graph-ready JSON-LD"
    },
    {
      "name": "Annotation tool",
      "url": "https://annotate.neurobagel.org/",
      "note": "Web app that writes Neurobagel data dictionaries"
    },
    {
      "name": "Query tool",
      "url": "https://query.neurobagel.org/",
      "note": "Federated cross-dataset search"
    }
  ],
  "tags": [
    "phenotype",
    "harmonisation",
    "federated search",
    "BIDS",
    "SNOMED CT"
  ],
  "url": "https://schemascope.org/o/neurobagel/",
  "evaluation": {
    "links": {
      "homepage": {
        "url": "https://neurobagel.org/",
        "code": 200,
        "state": "ok",
        "lastModified": "2026-10-20T18:14:32.000Z",
        "checkedAt": "2026-10-27T21:58:32.341Z"
      },
      "repository": {
        "url": "https://github.com/neurobagel/documentation",
        "code": 200,
        "state": "ok",
        "checkedAt": "2026-10-27T21:58:32.569Z"
      },
      "download": null
    },
    "github": {
      "slug": "neurobagel/documentation",
      "stars": 23,
      "forks": 13,
      "openIssues": 37,
      "pushedAt": "2026-10-27T15:43:25Z",
      "archived": false,
      "license": "MIT",
      "source": "https://api.github.com/repos/neurobagel/documentation",
      "fetchedAt": "2026-10-27T21:58:32.662Z"
    },
    "ols": null,
    "obo": null,
    "bioportal": null,
    "citations": [],
    "git": {
      "commit": "b5953b261511c64d2c970a2c694a2b74a6416a2f",
      "ref": "main",
      "headTag": null,
      "latestTag": null,
      "tagCount": 0,
      "tagDates": [],
      "url": "https://github.com/neurobagel/documentation/tree/b5953b261511c64d2c970a2c694a2b74a6416a2f",
      "source": "https://github.com/neurobagel/documentation.git/info/refs?service=git-upload-pack",
      "fetchedAt": "2026-10-27T21:58:32.217Z"
    },
    "tib": null,
    "dashboard": null,
    "quality": null,
    "oops": null,
    "releases": {
      "dates": [],
      "lastYear": 0,
      "from": null
    },
    "bioregistry": null,
    "artifact": null,
    "score": 30,
    "gross": 30,
    "earned": 30,
    "possible": 100,
    "qualityApplies": true,
    "penalty": {
      "score": 0,
      "reason": "no penalties (active)",
      "steps": [
        {
          "label": "Time since last activity",
          "pts": 0,
          "detail": "0.0 years → 4 × max(0, 0.0 − 1)"
        },
        {
          "label": "Inactive status",
          "pts": 0,
          "detail": "not archived, legacy or inactive"
        },
        {
          "label": "Consistency",
          "pts": 0,
          "detail": "not yet checked by a reasoner"
        }
      ]
    },
    "consistent": null,
    "dashboardComparison": null,
    "grade": "E",
    "fair": 19,
    "breakdown": {
      "findable": {
        "score": 0,
        "max": 12,
        "steps": [
          {
            "label": "Persistent identifier (F1)",
            "pts": 0,
            "max": 4,
            "detail": "no PURL / w3id / DOI for the artefact"
          },
          {
            "label": "Indexed in services (F4)",
            "pts": 0,
            "max": 5,
            "detail": "not indexed anywhere"
          },
          {
            "label": "Citable reference (F2)",
            "pts": 0,
            "max": 3,
            "detail": "no reference publication listed"
          }
        ],
        "notes": [
          "Persistent identifier (F1): no PURL / w3id / DOI for the artefact",
          "Indexed in services (F4): not indexed anywhere",
          "Citable reference (F2): no reference publication listed"
        ]
      },
      "accessible": {
        "score": 6,
        "max": 12,
        "steps": [
          {
            "label": "Homepage reachable",
            "pts": 3,
            "max": 3,
            "detail": "HTTP 200"
          },
          {
            "label": "Artefact retrievable over HTTP(S) (A1)",
            "pts": 3,
            "max": 6,
            "detail": "only the source repository is reachable (no direct download)"
          },
          {
            "label": "Metadata persists in a registry (A2)",
            "pts": 0,
            "max": 3,
            "detail": "not in Bioregistry or OBO Foundry"
          }
        ],
        "notes": [
          "Artefact retrievable over HTTP(S) (A1): only the source repository is reachable (no direct download)",
          "Metadata persists in a registry (A2): not in Bioregistry or OBO Foundry"
        ]
      },
      "interoperable": {
        "score": 8,
        "max": 12,
        "steps": [
          {
            "label": "Formal machine-readable format (I1)",
            "pts": 5,
            "max": 5,
            "detail": "JSON Schema, JSON-LD, RDF"
          },
          {
            "label": "Semantic-web IRIs (I2)",
            "pts": 3,
            "max": 3,
            "detail": "JSON-LD, RDF"
          },
          {
            "label": "References other vocabularies (I3)",
            "pts": 0,
            "max": 4,
            "detail": "no imported vocabularies found"
          }
        ],
        "notes": [
          "References other vocabularies (I3): no imported vocabularies found"
        ]
      },
      "reusable": {
        "score": 5,
        "max": 12,
        "steps": [
          {
            "label": "Clear license (R1.1)",
            "pts": 5,
            "max": 5,
            "detail": "MIT"
          },
          {
            "label": "Release provenance (R1.2)",
            "pts": 0,
            "max": 4,
            "detail": "no version in artefact, registry or release tags"
          },
          {
            "label": "Community standards (R1.3)",
            "pts": 0,
            "max": 3,
            "detail": "no independent compliance report (not on the OBO Dashboard)"
          }
        ],
        "notes": [
          "Release provenance (R1.2): no version in artefact, registry or release tags",
          "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)"
        ]
      },
      "quality": {
        "score": 0,
        "max": 20,
        "steps": [
          {
            "label": "Logical consistency",
            "pts": 0,
            "max": 10,
            "detail": "never checked by a reasoner"
          },
          {
            "label": "OWL 2 DL profile",
            "pts": 0,
            "max": 2,
            "detail": "profile not checked"
          },
          {
            "label": "Upper-ontology alignment",
            "pts": 0,
            "max": 3,
            "detail": "no BFO/COB/DOLCE import found"
          },
          {
            "label": "Standard relations (RO)",
            "pts": 0,
            "max": 1,
            "detail": "does not import the Relation Ontology"
          },
          {
            "label": "ROBOT report: no errors",
            "pts": 0,
            "max": 2,
            "detail": "no ROBOT report available"
          },
          {
            "label": "ROBOT report: warning density",
            "pts": 0,
            "max": 1,
            "detail": "no ROBOT report available"
          },
          {
            "label": "Pitfall scan: no critical pitfalls",
            "pts": 0,
            "max": 1,
            "detail": "no pitfall scan or ROBOT report yet"
          }
        ],
        "notes": [
          "Logical consistency: never checked by a reasoner",
          "OWL 2 DL profile: profile not checked",
          "Upper-ontology alignment: no BFO/COB/DOLCE import found",
          "Standard relations (RO): does not import the Relation Ontology",
          "ROBOT report: no errors: no ROBOT report available",
          "ROBOT report: warning density: no ROBOT report available",
          "Pitfall scan: no critical pitfalls: no pitfall scan or ROBOT report yet"
        ]
      },
      "maintenance": {
        "score": 10,
        "max": 16,
        "steps": [
          {
            "label": "Recency",
            "pts": 10,
            "max": 10,
            "detail": "2026-10-27 → 0.0 months (≤ 3 months)"
          },
          {
            "label": "Release cadence (12 months)",
            "pts": 0,
            "max": 6,
            "detail": "0 releases"
          }
        ],
        "notes": [
          "Release cadence (12 months): 0 releases"
        ]
      },
      "adoption": {
        "score": 1,
        "max": 16,
        "steps": [
          {
            "label": "Documented adopting projects",
            "pts": 0,
            "max": 7,
            "detail": "0 projects"
          },
          {
            "label": "Reused by other ontologies",
            "pts": 0,
            "max": 4,
            "detail": "0"
          },
          {
            "label": "Community signal",
            "pts": 1,
            "max": 5,
            "detail": "max(stars 23 → 1, citations 0 → 0)"
          }
        ],
        "notes": [
          "Documented adopting projects: 0 projects",
          "Reused by other ontologies: 0",
          "Community signal: max(stars 23 → 1, citations 0 → 0)"
        ]
      }
    },
    "lastActivity": "2026-10-27T15:43:25.000Z",
    "adopterCount": 0,
    "reuseCount": 0,
    "importCount": 0,
    "registries": [],
    "evaluatedVersion": {
      "label": "commit b5953b2",
      "from": "main at evaluation time",
      "value": "b5953b261511c64d2c970a2c694a2b74a6416a2f",
      "all": [
        {
          "label": "commit b5953b2",
          "from": "main at evaluation time",
          "value": "b5953b261511c64d2c970a2c694a2b74a6416a2f"
        }
      ]
    },
    "evaluatedAt": "2026-10-27T21:58:32.903Z",
    "runId": "2026-10-27T21-58-30Z",
    "adopters": []
  },
  "history": [
    {
      "runId": "2026-10-27T21-58-30Z",
      "at": "2026-10-27T21:58:35.897Z",
      "score": 30,
      "grade": "E",
      "fair": 19,
      "version": "commit b5953b2",
      "terms": null,
      "stars": 23,
      "license": "MIT",
      "lastActivity": "2026-10-27T15:43:25.000Z",
      "adopters": 0,
      "links": {
        "homepage": "ok",
        "repository": "ok"
      },
      "archived": false,
      "rubric": "3.5",
      "crit": {
        "findable": 0,
        "accessible": 6,
        "interoperable": 8,
        "reusable": 5,
        "quality": 0,
        "maintenance": 10,
        "adoption": 1
      },
      "penalty": 0,
      "metrics": {
        "consistent": null,
        "unsatisfiable": null,
        "owl2dl": null,
        "robotErrors": null,
        "robotWarnings": null,
        "criticalPitfalls": null,
        "imports": 0,
        "reuse": 0
      },
      "snapshot": "https://schemascope.org/runs/2026-10-27T21-58-30Z.json"
    }
  ],
  "changes": [],
  "recordProvenance": {
    "source": "harvest",
    "retrievedAt": "2026-10-27T21:32:12Z",
    "registries": [
      {
        "registry": "NeuroSchema",
        "key": "neuroschema",
        "id": "neurobagel",
        "url": "https://neuroschema.org/o/neurobagel/",
        "retrievedAt": "2026-10-27T21:32:12Z"
      }
    ],
    "fields": {
      "acronym": "NeuroSchema",
      "name": "NeuroSchema",
      "kind": "NeuroSchema",
      "description": "NeuroSchema",
      "formats": "NeuroSchema",
      "maintainer": "NeuroSchema",
      "license": "NeuroSchema",
      "homepage": "NeuroSchema",
      "repository": "NeuroSchema",
      "modules": "NeuroSchema",
      "tools": "NeuroSchema",
      "tags": "NeuroSchema"
    }
  },
  "evaluationProvenance": {
    "@context": {
      "prov": "http://www.w3.org/ns/prov#",
      "schemascope": "https://schemascope.org/ns#"
    },
    "@id": "https://schemascope.org/o/neurobagel/#evaluation",
    "@type": "prov:Entity",
    "prov:specializationOf": {
      "@id": "https://github.com/neurobagel/documentation",
      "schemascope:evaluatedVersion": "b5953b261511c64d2c970a2c694a2b74a6416a2f"
    },
    "prov:wasGeneratedBy": {
      "@id": "https://schemascope.org/runs/2026-10-27T21-58-30Z",
      "@type": "prov:Activity",
      "prov:startedAtTime": "2026-10-27T21:58:30.575Z",
      "prov:endedAtTime": "2026-10-27T21:58:35.897Z",
      "prov:wasAssociatedWith": {
        "@id": "https://schemascope.org/ns#evaluator",
        "@type": "prov:SoftwareAgent",
        "schemascope:version": "2.0.0"
      },
      "prov:used": [
        {
          "@id": "https://neurobagel.org/",
          "prov:atTime": "2026-10-27T21:58:32.341Z"
        },
        {
          "@id": "https://github.com/neurobagel/documentation",
          "prov:atTime": "2026-10-27T21:58:32.569Z"
        },
        {
          "@id": "https://github.com/neurobagel/documentation.git/info/refs?service=git-upload-pack",
          "prov:atTime": "2026-10-27T21:58:32.217Z"
        },
        {
          "@id": "https://api.github.com/repos/neurobagel/documentation",
          "prov:atTime": "2026-10-27T21:58:32.662Z"
        }
      ]
    },
    "prov:generatedAtTime": "2026-10-27T21:58:32.903Z"
  }
}